spacipy
latest

Quick start

  • Installing guide
  • Basic Usage

Tutorial

  • Handle gem files for downstream analysis
  • Handle mask (or image) files for downstream analysis
  • Maximum intensity Projection (MIP) plot

API

  • Gem
  • Stoarr
spacipy
  • Index
  • Edit on GitHub

Index

_ | A | B | C | F | G | I | M | P | R | S | T

_

  • __init__() (spacipy.Gem method)
    • (spacipy.Stoarr method)

A

  • alpha_shape() (spacipy.Stoarr method)

B

  • binning() (spacipy.Gem method)

C

  • center (spacipy.Gem property)
  • concat() (spacipy.Stoarr method)
  • contour_slice() (spacipy.Stoarr method)

F

  • find_boundaries() (spacipy.Stoarr method)

G

  • Gem (class in spacipy)

I

  • img_shape (spacipy.Gem property)

M

  • mask() (spacipy.Gem method)
  • mip_spatial() (in module spacipy)

P

  • padding() (spacipy.Stoarr method)
  • plot() (spacipy.Gem method)
    • (spacipy.Stoarr method)

R

  • readin() (spacipy.Gem class method)
  • rearrange() (spacipy.Gem method)
  • relocation() (spacipy.Gem method)
  • roi() (spacipy.Gem method)
  • rotation() (spacipy.Stoarr method)

S

  • stat() (spacipy.Gem method)
  • Stoarr (class in spacipy)

T

  • to_anndata() (spacipy.Gem method)
  • to_img() (spacipy.Gem method)
  • to_matrix() (spacipy.Gem method)
  • to_triplet() (spacipy.Stoarr method)

© Copyright 2023, kai han. Revision 09486cdf.