spacipy.Gem.stat

Gem.stat(genes=None, batch=None, bycell=False, outfile=None)

Compute some basic statistic for the object

Parameters:

• genes (str, list) – Also consider certain genes for computing beside by default total statistic.

• batch (str) – column name for Batch information if contain

• bycell (bool, defaul False) – statistic at cell level other than at spot level

• outfile (str) – save the results