spacipy.Stoarr

class spacipy.Stoarr

A Stoarr object is a numpy.ndarray with adapted method for spatial matrix

__init__()

Methods

__init__()
affine_transform(affineR[, reference, ...])	transform the objec with affine matrix
all([axis, out, keepdims, where])	Returns True if all elements evaluate to True.
alpha_shape([alpha])	Compute the alpha shape (concave hull) around the object
any([axis, out, keepdims, where])	Returns True if any of the elements of a evaluate to True.
argmax([axis, out, keepdims])	Return indices of the maximum values along the given axis.
argmin([axis, out, keepdims])	Return indices of the minimum values along the given axis.
argpartition(kth[, axis, kind, order])	Returns the indices that would partition this array.
argsort([axis, kind, order])	Returns the indices that would sort this array.
astype(dtype[, order, casting, subok, copy])	Copy of the array, cast to a specified type.
byteswap([inplace])	Swap the bytes of the array elements
choose(choices[, out, mode])	Use an index array to construct a new array from a set of choices.
clip([min, max, out])	Return an array whose values are limited to [min, max].
color_mapping(triplet[, color, cmap, category])
compress(condition[, axis, out])	Return selected slices of this array along given axis.
concat(other[, cols, dis])	Concat multiple objects into a single one
conj()	Complex-conjugate all elements.
conjugate()	Return the complex conjugate, element-wise.
contour_slice([transfer_to])	Slice the object with nearest contour box
copy([order])	Return a copy of the array.
cumprod([axis, dtype, out])	Return the cumulative product of the elements along the given axis.
cumsum([axis, dtype, out])	Return the cumulative sum of the elements along the given axis.
diagonal([offset, axis1, axis2])	Return specified diagonals.
dot
dump(file)	Dump a pickle of the array to the specified file.
dumps()	Returns the pickle of the array as a string.
fill(value)	Fill the array with a scalar value.
find_boundaries([mode])	Compute the boundaries of the object.
find_centroid()	Compute the centroid of the labelled object
flatten([order])	Return a copy of the array collapsed into one dimension.
getfield(dtype[, offset])	Returns a field of the given array as a certain type.
item(*args)	Copy an element of an array to a standard Python scalar and return it.
itemset(*args)	Insert scalar into an array (scalar is cast to array's dtype, if possible)
max([axis, out, keepdims, initial, where])	Return the maximum along a given axis.
mean([axis, dtype, out, keepdims, where])	Returns the average of the array elements along given axis.
min([axis, out, keepdims, initial, where])	Return the minimum along a given axis.
newbyteorder([new_order])	Return the array with the same data viewed with a different byte order.
nonzero()	Return the indices of the elements that are non-zero.
padding([pad])	Padding empty pixels around the object
partition(kth[, axis, kind, order])	Rearranges the elements in the array in such a way that the value of the element in kth position is in the position it would be in a sorted array.
plot([annotation, highlight, bg, ...])	Imaging the object
prod([axis, dtype, out, keepdims, initial, ...])	Return the product of the array elements over the given axis
ptp([axis, out, keepdims])	Peak to peak (maximum - minimum) value along a given axis.
put(indices, values[, mode])	Set a.flat[n] = values[n] for all n in indices.
ravel([order])	Return a flattened array.
readin(fname[, img_mode])	Alternate constructor to create a Stoarr from a file.
relabel([base, return_map])
repeat(repeats[, axis])	Repeat elements of an array.
reshape(shape[, order])	Returns an array containing the same data with a new shape.
resize(new_shape[, refcheck])	Change shape and size of array in-place.
rotation([angle, contour_slice])	rotate the object clockwise
round([decimals, out])	Return a with each element rounded to the given number of decimals.
searchsorted(v[, side, sorter])	Find indices where elements of v should be inserted in a to maintain order.
setfield(val, dtype[, offset])	Put a value into a specified place in a field defined by a data-type.
setflags([write, align, uic])	Set array flags WRITEABLE, ALIGNED, WRITEBACKIFCOPY, respectively.
sort([axis, kind, order])	Sort an array in-place.
squeeze([axis])	Remove axes of length one from a.
std([axis, dtype, out, ddof, keepdims, where])	Returns the standard deviation of the array elements along given axis.
sum([axis, dtype, out, keepdims, initial, where])	Return the sum of the array elements over the given axis.
swapaxes(axis1, axis2)	Return a view of the array with axis1 and axis2 interchanged.
take(indices[, axis, out, mode])	Return an array formed from the elements of a at the given indices.
to_triplet([name])	Convert the object to triplet structure
tobytes([order])	Construct Python bytes containing the raw data bytes in the array.
tofile(fid[, sep, format])	Write array to a file as text or binary (default).
tolist()	Return the array as an a.ndim-levels deep nested list of Python scalars.
tostring([order])	A compatibility alias for tobytes, with exactly the same behavior.
trace([offset, axis1, axis2, dtype, out])	Return the sum along diagonals of the array.
transpose(*axes)	Returns a view of the array with axes transposed.
var([axis, dtype, out, ddof, keepdims, where])	Returns the variance of the array elements, along given axis.
view([dtype][, type])	New view of array with the same data.
write(outfile[, fmt])	save the object into txt

Attributes

T	View of the transposed array.
base	Base object if memory is from some other object.
ctypes	An object to simplify the interaction of the array with the ctypes module.
data	Python buffer object pointing to the start of the array's data.
dtype	Data-type of the array's elements.
flags	Information about the memory layout of the array.
flat	A 1-D iterator over the array.
imag	The imaginary part of the array.
itemsize	Length of one array element in bytes.
nbytes	Total bytes consumed by the elements of the array.
ndim	Number of array dimensions.
real	The real part of the array.
shape	Tuple of array dimensions.
size	Number of elements in the array.
strides	Tuple of bytes to step in each dimension when traversing an array.